Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8453401-SRR8453402/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  176,329,357
 Normal Paired: 172,531,330 (97.85%)
 Chimeric Paired: 7,426 (0.00%)
 Chimeric Ambiguous: 5,927 (0.00%)
 Unmapped: 3,784,674 (2.15%)
 Ligation Motif Present: 40,637 (0.02%)
Alignable (Normal+Chimeric Paired): 172,538,756 (97.85%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-29T04:20:09,097]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 87,560,114 (49.66%)
PCR Duplicates: 84,978,642 (48.19%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 111,035,054
Intra-fragment Reads: 45,488,936 (25.80% / 51.95%)
Below MAPQ Threshold: 14,753,643 (8.37% / 16.85%)
Hi-C Contacts: 27,317,535 (15.49% / 31.20%)
 Ligation Motif Present: 15,817  (0.01% / 0.02%)
 3' Bias (Long Range): 77% - 23%
 Pair Type %(L-I-O-R): 26% - 24% - 24% - 25%
Inter-chromosomal: 4,126,617  (2.34% / 4.71%)
Intra-chromosomal: 23,190,918  (13.15% / 26.49%)
Short Range (<20Kb): 16,223,851  (9.20% / 18.53%)
Long Range (>20Kb): 6,966,984  (3.95% / 7.96%)